Simple ways to get the z-axis router/spindle mount to be perpendicular to the table, you will have to get a level. Set the z-axis in place although you will have to remove it to tighten the top screws which will hold the top router/spindle mounts on the z-axis but you will be able to tighten the lower mount without having to remove the entire z-axis.
Pending more info.
It's not the Router that is out. It's the Z Axis, Y Axis not being perpendicular to the table. One of the problems was the double washer on the back side of the top rail V bearing. I took them off and ground down the screw head instead. Your instructions for building the Black Toe/Foot are NON EXISTENT, for want of a better word. I have buyers remorse.
It's still not perpendicular but it's closer.
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How do I adjust the gantry/router mount so it is perpendicular on a Blacktoe machine.